Set Logo Menu defaults and finalize flatpak setup

hosts/nanuqsaurus.nix

@@ -5,6 +5,7 @@
     inputs.lix-module.nixosModules.lixFromNixpkgs
     inputs.nix-index-database.nixosModules.nix-index
     inputs.nix-flatpak.nixosModules.nix-flatpak
+    ./nanuqsaurus-hardware.nix
     ../modules/system/flatpak.nix
     ../modules/system/base.nix
     ../modules/system/packages.nix

modules/desktop/gnome-minimal.nix

@@ -1,12 +1,49 @@
-{ pkgs, ... }:
+{ pkgs, lib, ... }:
 
-{
+let
+  # Patched Logo Menu extension (same patch as installed system-wide).
+  logoMenuExtension = pkgs.gnomeExtensions.logo-menu.overrideAttrs (old: {
+    patches = (old.patches or []) ++ [ ./patches/logo-menu-custom-menu.patch ];
+  });
+
+  # Expose the extension schema in the layout expected by gsettings overrides.
+  logoMenuSchemas = pkgs.runCommand "logo-menu-gsettings-schemas" { } ''
+    schemaSrc="${logoMenuExtension}/share/gnome-shell/extensions/logomenu@aryan_k/schemas";
+    dest=$out/share/gsettings-schemas/logo-menu-gsettings-schemas/glib-2.0/schemas
+    mkdir -p "$dest"
+    cp -a "$schemaSrc"/*.xml "$dest"/
+  '';
+in {
   services.displayManager.gdm.enable = true;
   services.desktopManager.gnome.enable = true;
+  services.desktopManager.gnome.extraGSettingsOverridePackages = [
+    pkgs.gnome-shell
+    logoMenuSchemas
+  ];
+
+  # Ensure GNOME sees the compiled overrides.
+  environment.profileRelativeEnvVars.XDG_DATA_DIRS = lib.mkAfter [
+    "/share/gsettings-schemas/nixos-gsettings-overrides"
+  ];
 
   services.gnome.core-developer-tools.enable = false;
   services.gnome.games.enable = false;
 
+  # System default GNOME Shell extensions (user can still toggle/override).
+  services.desktopManager.gnome.extraGSettingsOverrides = ''
+    [org/gnome/shell]
+    disable-user-extensions=false
+    enabled-extensions=['all-in-one-clipboard@NiffirgkcaJ.github.com','AlphabeticalAppGrid@stuarthayhurst','app-hider@lynith.dev','apps@github.com.howbea','blur-my-shell@aunetx','caffeine@patapon.info','logomenu@aryan_k','places-menu@gnome-shell-extensions.gcampax.github.com','restartto@tiagoporsch.github.io']
+    favorite-apps=['firefox.desktop','org.gnome.Settings.desktop','org.gnome.Ptyxis.desktop','com.mattjakeman.ExtensionManager.desktop']
+
+    [org/gnome/shell/extensions/logo-menu]
+    menu-button-icon-image=51
+    menu-button-terminal='ghostty'
+    menu-button-system-monitor='flatpak run io.missioncenter.MissionCenter'
+    menu-button-extensions-app='com.mattjakeman.ExtensionManager.desktop'
+    hide-softwarecentre=true
+  '';
+
   environment.gnome.excludePackages = with pkgs; [
     # comment out to include
     gnome-tour

modules/desktop/patches/logo-menu-custom-menu.patch

@@ -0,0 +1,132 @@
+diff -ru orig/extension.js mod/extension.js
+--- orig/extension.js	2026-02-03 17:53:49.513281802 +0200
++++ mod/extension.js	2026-02-03 17:53:49.528021029 +0200
+@@ -47,13 +47,8 @@
+         this.setIconSize();
+         this.add_child(this.icon);
+ 
+-        // Menu
+-        this._settings.connectObject('changed::hide-softwarecentre', () => this._displayMenuItems(), this);
+-        this._settings.connectObject('changed::show-power-options', () => this._displayMenuItems(), this);
+-        this._settings.connectObject('changed::hide-forcequit', () => this._displayMenuItems(), this);
+-        this._settings.connectObject('changed::show-lockscreen', () => this._displayMenuItems(), this);
+-        this._settings.connectObject('changed::show-activities-button', () => this._displayMenuItems(), this);
+-        this._displayMenuItems();
++	// Menu (custom layout)
++	this._displayMenuItems();
+ 
+         // bind middle click option to toggle overview
+         this.connect('button-press-event', this._buttonPressEvent.bind(this));
+@@ -64,51 +59,19 @@
+     }
+ 
+     _displayMenuItems() {
+-        const showPowerOptions = this._settings.get_boolean('show-power-options');
+-        const showForceQuit = !this._settings.get_boolean('hide-forcequit');
+-        const showLockScreen = this._settings.get_boolean('show-lockscreen');
+-        const showSoftwareCenter = !this._settings.get_boolean('hide-softwarecentre');
+-        const showActivitiesButton = this._settings.get_boolean('show-activities-button');
+-
+-        this.menu.removeAll();
+-
+-        this._addItem(new MenuItem(_('About My System'), () => this._aboutThisDistro()));
+-        // this._addItem(new MenuItem(_('System Settings...'), () => this._systemPreferences()));
+-        this._addItem(new PopupMenu.PopupSeparatorMenuItem());
+-
+-        if (!showActivitiesButton)
+-            this._addItem(new MenuItem(_('Activities'), () => this._overviewToggle()));
+-
+-        this._addItem(new MenuItem(_('App Grid'), () => this._showAppGrid()));
+-        this._addItem(new PopupMenu.PopupSeparatorMenuItem());
+-
+-        if (showSoftwareCenter)
+-            this._addItem(new MenuItem(_('Software Center'), () => this._openSoftwareCenter()));
+-
+-        this._addItem(new MenuItem(_('System Monitor'), () => this._openSystemMonitor()));
+-        this._addItem(new MenuItem(_('Terminal'), () => this._openTerminal()));
+-        this._addItem(new MenuItem(_('Extensions'), () => this._openExtensionsApp()));
+-
+-        if (showForceQuit) {
+-            this._addItem(new PopupMenu.PopupSeparatorMenuItem());
+-            this._addItem(new MenuItem(_('Force Quit App'), () => this._forceQuit()));
+-        }
+-
+-        if (showPowerOptions) {
+-            this._addItem(new PopupMenu.PopupSeparatorMenuItem());
+-            this._addItem(new MenuItem(_('Sleep'), () => this._sleep()));
+-            this._addItem(new MenuItem(_('Restart...'), () => this._restart()));
+-            this._addItem(new MenuItem(_('Shut Down...'), () => this._shutdown()));
+-            this._addItem(new PopupMenu.PopupSeparatorMenuItem());
+-
+-            if (showLockScreen)
+-                this._addItem(new MenuItem(_('Lock Screen'), () => this._lockScreen()));
+-
+-            this._addItem(new MenuItem(_('Log Out...'), () => this._logOut()));
+-        } else if (!showPowerOptions && showLockScreen) {
+-            this._addItem(new PopupMenu.PopupSeparatorMenuItem());
+-            this._addItem(new MenuItem(_('Lock Screen'), () => this._lockScreen()));
+-        }
++	this.menu.removeAll();
++
++	// Custom menu layout
++	this._addItem(new MenuItem(_('About My System'), () => this._aboutThisDistro()));
++	this._addItem(new MenuItem(_('System Settings'), () => this._systemPreferences()));
++
++	this._addItem(new PopupMenu.PopupSeparatorMenuItem());
++	this._addItem(new MenuItem(_('Extensions'), () => this._openExtensionsApp()));
++	this._addItem(new MenuItem(_('System Monitor'), () => this._openSystemMonitor()));
++	this._addItem(new MenuItem(_('Terminal'), () => this._openTerminal()));
++
++	this._addItem(new PopupMenu.PopupSeparatorMenuItem());
++	this._addItem(new MenuItem(_('Containers'), () => this._openContainers()));
+     }
+ 
+     _buttonPressEvent(actor, event) {
+diff -ru orig/schemas/org.gnome.shell.extensions.logo-menu.gschema.xml mod/schemas/org.gnome.shell.extensions.logo-menu.gschema.xml
+--- orig/schemas/org.gnome.shell.extensions.logo-menu.gschema.xml	2026-02-03 17:53:49.513219947 +0200
++++ mod/schemas/org.gnome.shell.extensions.logo-menu.gschema.xml	2026-02-03 17:53:49.531021112 +0200
+@@ -4,7 +4,7 @@
+   <schema path="/org/gnome/shell/extensions/Logo-menu/" id="org.gnome.shell.extensions.logo-menu">
+ 
+     <key type="i" name="menu-button-icon-image">
+-      <default>0</default>
++      <default>51</default>
+       <summary>Menu Button Icon Image</summary>
+       <description>Change the Menu Button Icon Image.</description>
+     </key>
+@@ -22,7 +22,7 @@
+     </key>
+ 
+     <key type="s" name="menu-button-extensions-app">
+-      <default>"org.gnome.Extensions.desktop"</default>
++      <default>"com.mattjakeman.ExtensionManager.desktop"</default>
+       <summary>Preffered Extensions app</summary>
+       <description>Change to preffered Extensions app.</description>
+     </key>
+@@ -34,7 +34,7 @@
+     </key>
+ 
+     <key type="s" name="menu-button-terminal">
+-      <default>"gnome-terminal"</default>
++      <default>"ghostty"</default>
+       <summary>Menu Button Terminal</summary>
+       <description>Change the Menu Button Terminal.</description>
+     </key>
+@@ -70,7 +70,7 @@
+     </key>
+ 
+     <key type="b" name="hide-softwarecentre">
+-      <default>false</default>
++      <default>true</default>
+       <summary>Toggle Software Centre option visibility</summary>
+       <description>Toggle Software Centre option visibility.</description>
+     </key>
+@@ -95,7 +95,7 @@
+     </key>
+ 
+     <key type="s" name="menu-button-system-monitor">
+-      <default>"gnome-system-monitor"</default>
++      <default>"flatpak run io.missioncenter.MissionCenter"</default>
+       <summary>Menu System Monitor</summary>
+       <description>Change the Menu System Monitor.</description>
+     </key>

modules/system/flatpak.nix

@@ -20,6 +20,7 @@
     packages = [
       "com.github.tchx84.Flatseal"
       "io.github.kolunmi.Bazaar"
+      "io.missioncenter.MissionCenter"
     ];
   };
 }

modules/system/packages.nix

@@ -9,6 +9,19 @@
     pkgs.flatpak
     pkgs.ghostty
     pkgs.git
+    pkgs.gnome-browser-connector   # lets users install extensions from GNOME Extensions website
+    pkgs.gnome-extension-manager   # GUI to browse/install GNOME Shell extensions
+    pkgs.gnomeExtensions.all-in-one-clipboard
+    pkgs.gnomeExtensions.alphabetical-app-grid
+    pkgs.gnomeExtensions.app-hider
+    pkgs.gnomeExtensions.apps
+    pkgs.gnomeExtensions.blur-my-shell
+    pkgs.gnomeExtensions.caffeine
+    (pkgs.gnomeExtensions.logo-menu.overrideAttrs (old: {
+      patches = (old.patches or []) ++ [ ../desktop/patches/logo-menu-custom-menu.patch ];
+    }))
+    pkgs.gnomeExtensions.places-status-indicator
+    pkgs.gnomeExtensions.restart-to
     pkgs.home-manager
     pkgs.just
     pkgs.libnotify

scripts/hm-bootstrap.sh

@@ -61,8 +61,8 @@ notify() {
   fi
 }
 
-notify "System setup running" "Please wait until setup completes."
+notify "Reticulating Splines" "Bootstrapping. Please stay tuned."
-trap 'notify "System setup finished" "You may continue using the system."' EXIT
+trap 'notify "Bootstrap finished" "Your system is fully hydrated. It is recommended to logout and back in."' EXIT
 
 mkdir -p "$HOME/.config/home-manager"
 for f in flake.nix home.nix; do

templates/home-home.nix

@@ -18,7 +18,7 @@
     packages = [ ];
     update = {
       auto.enable = true;
-      auto.onCalendar = "weekly";
+      auto.onCalendar = "daily";
       onActivation = false;
     };
   };