optimizations
This commit is contained in:
randogoth
parent
e4ea8d6ffc
commit
b307383f52
9 changed files with 33 additions and 10315 deletions
3
.gitignore
vendored
3
.gitignore
vendored
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@ -1,2 +1,3 @@
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/target
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*.json
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*.json
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*.lock
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230
Cargo.lock
generated
230
Cargo.lock
generated
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@ -1,230 +0,0 @@
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# This file is automatically @generated by Cargo.
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# It is not intended for manual editing.
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version = 3
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[[package]]
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name = "atty"
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version = "0.2.14"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "d9b39be18770d11421cdb1b9947a45dd3f37e93092cbf377614828a319d5fee8"
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dependencies = [
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"hermit-abi",
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"libc",
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"winapi",
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]
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[[package]]
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name = "autocfg"
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version = "1.1.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "d468802bab17cbc0cc575e9b053f41e72aa36bfa6b7f55e3529ffa43161b97fa"
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[[package]]
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name = "bitflags"
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version = "1.3.2"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a"
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[[package]]
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name = "cfg-if"
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version = "1.0.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd"
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[[package]]
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name = "heck"
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version = "0.4.1"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8"
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[[package]]
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name = "hermit-abi"
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version = "0.1.19"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "62b467343b94ba476dcb2500d242dadbb39557df889310ac77c5d99100aaac33"
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dependencies = [
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"libc",
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]
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[[package]]
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name = "itoa"
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version = "1.0.10"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "b1a46d1a171d865aa5f83f92695765caa047a9b4cbae2cbf37dbd613a793fd4c"
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[[package]]
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name = "libc"
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version = "0.2.153"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "9c198f91728a82281a64e1f4f9eeb25d82cb32a5de251c6bd1b5154d63a8e7bd"
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[[package]]
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name = "lyagushka"
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version = "1.1.0"
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dependencies = [
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"autocfg",
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"scopeguard",
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]
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[[package]]
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name = "lyagushka"
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version = "1.1.0"
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dependencies = [
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"atty",
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"pyo3",
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"serde",
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"serde_json",
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]
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[[package]]
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name = "memoffset"
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version = "0.9.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "5a634b1c61a95585bd15607c6ab0c4e5b226e695ff2800ba0cdccddf208c406c"
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dependencies = [
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"autocfg",
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]
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[[package]]
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name = "once_cell"
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version = "1.19.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "3fdb12b2476b595f9358c5161aa467c2438859caa136dec86c26fdd2efe17b92"
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[[package]]
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name = "parking_lot"
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version = "0.12.1"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "3742b2c103b9f06bc9fff0a37ff4912935851bee6d36f3c02bcc755bcfec228f"
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dependencies = [
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"lock_api",
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"parking_lot_core",
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]
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[[package]]
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name = "parking_lot_core"
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version = "0.9.9"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "4c42a9226546d68acdd9c0a280d17ce19bfe27a46bf68784e4066115788d008e"
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dependencies = [
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"cfg-if",
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"libc",
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"redox_syscall",
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"smallvec",
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"windows-targets",
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]
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[[package]]
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name = "proc-macro2"
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version = "1.0.78"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "e2422ad645d89c99f8f3e6b88a9fdeca7fabeac836b1002371c4367c8f984aae"
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dependencies = [
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"unicode-ident",
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]
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[[package]]
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name = "quote"
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version = "1.0.35"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "291ec9ab5efd934aaf503a6466c5d5251535d108ee747472c3977cc5acc868ef"
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dependencies = [
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"proc-macro2",
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]
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[[package]]
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name = "redox_syscall"
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version = "0.4.1"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "4722d768eff46b75989dd134e5c353f0d6296e5aaa3132e776cbdb56be7731aa"
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dependencies = [
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"bitflags",
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]
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[[package]]
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name = "ryu"
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version = "1.0.16"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "f98d2aa92eebf49b69786be48e4477826b256916e84a57ff2a4f21923b48eb4c"
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[[package]]
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name = "serde"
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version = "1.0.196"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "870026e60fa08c69f064aa766c10f10b1d62db9ccd4d0abb206472bee0ce3b32"
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dependencies = [
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"serde_derive",
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]
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[[package]]
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name = "serde_derive"
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version = "1.0.196"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "33c85360c95e7d137454dc81d9a4ed2b8efd8fbe19cee57357b32b9771fccb67"
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dependencies = [
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"proc-macro2",
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"quote",
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"syn",
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]
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[[package]]
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name = "serde_json"
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version = "1.0.113"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "69801b70b1c3dac963ecb03a364ba0ceda9cf60c71cfe475e99864759c8b8a79"
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dependencies = [
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"itoa",
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"ryu",
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"serde",
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]
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[[package]]
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name = "syn"
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version = "2.0.48"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "0f3531638e407dfc0814761abb7c00a5b54992b849452a0646b7f65c9f770f3f"
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dependencies = [
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"proc-macro2",
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"quote",
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"unicode-ident",
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]
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[[package]]
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name = "target-lexicon"
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version = "0.12.13"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "69758bda2e78f098e4ccb393021a0963bb3442eac05f135c30f61b7370bbafae"
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[[package]]
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name = "unicode-ident"
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version = "1.0.12"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "3354b9ac3fae1ff6755cb6db53683adb661634f67557942dea4facebec0fee4b"
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[[package]]
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name = "unindent"
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version = "0.2.3"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "c7de7d73e1754487cb58364ee906a499937a0dfabd86bcb980fa99ec8c8fa2ce"
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[[package]]
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name = "winapi"
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version = "0.3.9"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "5c839a674fcd7a98952e593242ea400abe93992746761e38641405d28b00f419"
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dependencies = [
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"winapi-i686-pc-windows-gnu",
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"winapi-x86_64-pc-windows-gnu",
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]
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[[package]]
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name = "winapi-i686-pc-windows-gnu"
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version = "0.4.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6"
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[[package]]
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name = "winapi-x86_64-pc-windows-gnu"
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version = "0.4.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "712e227841d057c1ee1cd2fb22fa7e5a5461ae8e48fa2ca79ec42cfc1931183f"
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14
Cargo.toml
14
Cargo.toml
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name = "lyagushka"
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version = "1.1.0"
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edition = "2021"
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crate-type = ["cdylib"]
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[dependencies]
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atty = "0.2.14"
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pyo3 = { version = "0.20.2", features = ["extension-module"] }
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pyo3 = { version = "0.23.3", features = ["extension-module"] }
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serde = { version = "1.0.196", features = ["derive"] }
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serde_json = "1.0.113"
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serde_json = "1.0.113"
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[lib]
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name = "lyagushka"
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path = "src/lib.rs"
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crate-type = ["cdylib", "lib"]
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[[bin]]
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name = "lyagushka"
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path = "src/bin/bin.rs"
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12
Pipfile
Normal file
12
Pipfile
Normal file
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[[source]]
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url = "https://pypi.org/simple"
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verify_ssl = true
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name = "pypi"
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[packages]
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maturin = "*"
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[dev-packages]
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[requires]
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python_version = "3.12"
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10000
random_values.txt
10000
random_values.txt
File diff suppressed because it is too large
Load diff
10
readme.md
10
readme.md
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@ -11,14 +11,16 @@ It is an algorithm that analyzes a one-dimensional dataset of integers to identi
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With a Rust and Cargo environment set up, simply run:
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```sh
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$ cargo build --release
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cargo build --release
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```
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To also compile a Python wheel, you need Maturin set up. SImply run:
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To also compile a Python wheel, you need Maturin set up:
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```sh
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$ maturin build --release
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$ pip install target/wheels/lyagushka-1.1.0*.whl
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pipenv install
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pipenv shell
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maturin build --release
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pip install target/wheels/lyagushka-1.1.0*.whl
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```
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## Usage
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@ -154,7 +154,7 @@ impl Lyagushka {
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}
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#[pymodule]
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fn lyagushka(_py: Python, m: &PyModule) -> PyResult<()> {
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fn lyagushka(m: &Bound<'_, PyModule>) -> PyResult<()> {
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m.add_class::<Lyagushka>()?;
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Ok(())
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}
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}
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75
test.py
75
test.py
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from pyagushka import Lyagushka
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from randonautentropy import rndo
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import json
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import matplotlib.pyplot as plt
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import numpy as np
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from scipy.interpolate import interp1d
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def generate_random_data(size=1024, max_value=100):
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random_data = []
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max_value_bytes = (max_value.bit_length() + 7) // 8
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max_int_for_bytes = 2**(max_value_bytes * 8) - 1
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min_bytes_needed = max_value_bytes * size
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mod_cutoff = max_int_for_bytes - (max_int_for_bytes % max_value) - 1
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# Populate the 'random_data' array
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while len(random_data) < size:
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hex_data = rndo.get(length=min_bytes_needed)
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hex_chunks = list((hex_data[0+i:2 * max_value_bytes+i] for i in range(0, len(hex_data), 2 * max_value_bytes)))
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for i in hex_chunks:
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num = int(i, 16)
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if num <= mod_cutoff and len(random_data) < size:
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random_data.append( num % (max_value + 1) )
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return random_data
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def filter_by_z_score(data, z_score_threshold):
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filtered_data = [item for item in data if item['z_score'] is not None and abs(item['z_score']) >= z_score_threshold]
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return filtered_data
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# load the random test data
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# dataset = []
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# with open('random_values.txt', 'r') as file:
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# for line in file:
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# random_data.append(int(line.strip()))
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dataset = generate_random_data(1024, 1024)
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dataset.sort()
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with open('dataset.json', 'w') as r:
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r.write(json.dumps(dataset, indent=4))
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# calculate the anomalies in the data
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zhaba = Lyagushka(dataset)
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analysis_results = json.loads(zhaba.search(4.0, 7))
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analysis_results = filter_by_z_score(analysis_results, 1.0)
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with open('result.json', 'w') as r:
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r.write(json.dumps(analysis_results, indent=4))
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# Initialize plot
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plt.figure(figsize=(10, 6))
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# Color palette for clusters and gaps
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colors = plt.cm.jet(np.linspace(0, 1, len(analysis_results)))
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# Plot dataset points and assign colors based on cluster membership
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for i, result in enumerate(analysis_results):
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if result['num_elements'] > 0: # It's a cluster
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for point in dataset:
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plt.plot(point, 0, 'o', color=colors[i]) # Plot points in cluster with the same color
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# Plot a line segment for the cluster/gap Z-score in the same color
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start = result['start']
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end = result['end']
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z_score = result['z_score'] if result['z_score'] is not None else 0
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plt.plot([start, end], [z_score, z_score], color=colors[i], linewidth=2)
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# Enhancements for visualization
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plt.xlabel('Integer Value')
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plt.ylabel('Z-Score')
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plt.title('Cluster and Gap Analysis')
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plt.grid(True)
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plt.show()
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